Index

A

adaptive() (pyodesys.core.ODESys method) all_invariant_names() (pyodesys.symbolic.SymbolicSys method) all_invariants() (pyodesys.symbolic.SymbolicSys method) analytic_stiffness() (pyodesys.symbolic.SymbolicSys method)

append_iv (pyodesys.symbolic.SymbolicSys attribute) as_autonomous() (pyodesys.symbolic.SymbolicSys method) as_standalone() (pyodesys.native.cvode.NativeCvodeSys method) at() (pyodesys.results.Result method)

B

between() (pyodesys.results.Result method)

C

calc_invariant_violations() (pyodesys.results.Result method) chained_parameter_variation() (in module pyodesys.core) (pyodesys.core.ODESys method)

check_transforms() (in module pyodesys.util) copy() (pyodesys.results.Result method)

E

eq() (pyodesys.util.requires method) EulerBackward_example_integrator (class in pyodesys.integrators)

EulerForward_example_integrator (class in pyodesys.integrators) extend_by_integration() (pyodesys.results.Result method)

F

fit_factory() (in module pyodesys.convergence) from_callback() (pyodesys.symbolic.ScaledSys class method) (pyodesys.symbolic.SymbolicSys class method) (pyodesys.symbolic.TransformedSys class method)

from_linear_invariants() (pyodesys.symbolic.PartiallySolvedSystem class method) from_other() (pyodesys.symbolic.SymbolicSys class method) from_other_new_params() (pyodesys.symbolic.SymbolicSys class method) from_other_new_params_by_name() (pyodesys.symbolic.SymbolicSys class method)

G

ge() (pyodesys.util.requires method) get_dfdx() (pyodesys.symbolic.SymbolicSys method) get_dfdx_callback() (pyodesys.symbolic.SymbolicSys method) get_f_ty_callback() (pyodesys.symbolic.SymbolicSys method) get_first_step_callback() (pyodesys.symbolic.SymbolicSys method) get_invariants_callback() (pyodesys.symbolic.SymbolicSys method)

get_j_ty_callback() (pyodesys.symbolic.SymbolicSys method) get_jac() (pyodesys.symbolic.SymbolicSys method) get_jtimes() (pyodesys.symbolic.SymbolicSys method) get_jtimes_callback() (pyodesys.symbolic.SymbolicSys method) get_logexp() (in module pyodesys.symbolic) get_roots_callback() (pyodesys.symbolic.SymbolicSys method) gt() (pyodesys.util.requires method)

I

import_() (in module pyodesys.util) info_vlines() (in module pyodesys.plotting) integrate() (pyodesys.core.ODESys method) (pyodesys.symbolic.PartiallySolvedSystem method) integrate_adaptive (pyodesys.integrators.EulerBackward_example_integrator attribute) (pyodesys.integrators.EulerForward_example_integrator attribute) (pyodesys.integrators.Midpoint_example_integrator attribute) (pyodesys.integrators.Trapezoidal_example_integrator attribute)

integrate_adaptive() (pyodesys.integrators.RK4_example_integrator static method) integrate_auto_switch() (in module pyodesys.core) integrate_chained() (in module pyodesys.core) integrate_predefined() (pyodesys.integrators.EulerBackward_example_integrator static method) (pyodesys.integrators.EulerForward_example_integrator static method) (pyodesys.integrators.Midpoint_example_integrator static method) (pyodesys.integrators.RK4_example_integrator static method) (pyodesys.integrators.Trapezoidal_example_integrator static method) integrate_tolerance_series() (in module pyodesys.convergence)

J

jacobian_singular() (pyodesys.symbolic.SymbolicSys method)

L

le() (pyodesys.util.requires method)

linear_invariants() (pyodesys.symbolic.SymbolicSys property) lt() (pyodesys.util.requires method)

M

merge_dicts() (in module pyodesys.util) Midpoint_example_integrator (class in pyodesys.integrators) MissingImport (class in pyodesys.util) module pyodesys pyodesys.analysis pyodesys.convergence pyodesys.core pyodesys.integrators pyodesys.native pyodesys.native.cvode pyodesys.native.gsl pyodesys.native.odeint pyodesys.native.util pyodesys.plotting pyodesys.results pyodesys.symbolic pyodesys.util

N

named_dep() (pyodesys.results.Result method) named_param() (pyodesys.results.Result method) namespace (pyodesys.native.cvode.NativeCvodeCode attribute) NativeCvodeCode (class in pyodesys.native.cvode) NativeCvodeSys (class in pyodesys.native.cvode)

NativeGSLCode (class in pyodesys.native.gsl) NativeGSLSys (class in pyodesys.native.gsl) NativeOdeintCode (class in pyodesys.native.odeint) NativeOdeintSys (class in pyodesys.native.odeint) ne() (pyodesys.util.requires method) ny() (pyodesys.symbolic.SymbolicSys property)

O

ODESys (class in pyodesys.core)

OdeSys (class in pyodesys.core)

P

parse_standalone_output() (in module pyodesys.native.util) PartiallySolvedSystem (class in pyodesys.symbolic) plot() (pyodesys.results.Result method) plot_invariant_violations() (pyodesys.results.Result method) plot_phase_plane() (in module pyodesys.plotting) (pyodesys.core.ODESys method) (pyodesys.results.Result method) plot_result() (in module pyodesys.plotting) (pyodesys.core.ODESys method) post_process() (pyodesys.core.ODESys method) pre_process() (pyodesys.core.ODESys method) predefined() (pyodesys.core.ODESys method) pycvodes_double() (in module pyodesys.util) pycvodes_klu() (in module pyodesys.util) pyodesys module pyodesys.analysis module pyodesys.convergence module pyodesys.core module

pyodesys.integrators module pyodesys.native module pyodesys.native.cvode module pyodesys.native.gsl module pyodesys.native.odeint module pyodesys.native.util module pyodesys.plotting module pyodesys.results module pyodesys.symbolic module pyodesys.util module

R

RecoverableError render_mako() (in module pyodesys.native.util) requires (class in pyodesys.util)

Result (class in pyodesys.results) right_hand_ylabels() (in module pyodesys.plotting) RK4_example_integrator (class in pyodesys.integrators)

S

ScaledSys (class in pyodesys.symbolic) stack_1d_on_left() (in module pyodesys.util) stiffness() (pyodesys.core.ODESys method) (pyodesys.results.Result method)

SymbolicSys (class in pyodesys.symbolic) symmetricsys() (in module pyodesys.symbolic)

T

to_arrays() (pyodesys.core.ODESys method) (pyodesys.symbolic.SymbolicSys method) transform_exprs_dep() (in module pyodesys.util)

transform_exprs_indep() (in module pyodesys.util) TransformedSys (class in pyodesys.symbolic) Trapezoidal_example_integrator (class in pyodesys.integrators)

W

with_jacobian (pyodesys.integrators.EulerBackward_example_integrator attribute) (pyodesys.integrators.EulerForward_example_integrator attribute) (pyodesys.integrators.Midpoint_example_integrator attribute) (pyodesys.integrators.RK4_example_integrator attribute) (pyodesys.integrators.Trapezoidal_example_integrator attribute)

wrapper_name (pyodesys.native.cvode.NativeCvodeCode attribute) (pyodesys.native.gsl.NativeGSLCode attribute) (pyodesys.native.odeint.NativeOdeintCode attribute)