Index

A

A() (in module chempy.electrolytes) active_conc_prod() (chempy.kinetics.rates.MassAction method) (chempy.thermodynamics.expressions.MassActionEq method) active_prod_stoich() (chempy.chemistry.Reaction method) active_prod_stoichs() (chempy.reactionsystem.ReactionSystem method) active_reac_stoich() (chempy.chemistry.Reaction method) active_reac_stoichs() (chempy.reactionsystem.ReactionSystem method) all_non_negative() (chempy.util.arithmeticdict.ArithmeticDict method) all_prod_stoich() (chempy.chemistry.Reaction method) all_prod_stoichs() (chempy.reactionsystem.ReactionSystem method) all_reac_stoich() (chempy.chemistry.Reaction method) all_reac_stoichs() (chempy.reactionsystem.ReactionSystem method) allclose() (in module chempy.units) args_dimensionality() (chempy.kinetics.rates.Arrhenius method) (chempy.kinetics.rates.Eyring method) (chempy.kinetics.rates.EyringHS method) (chempy.kinetics.rates.MassAction method) (chempy.kinetics.rates.Radiolytic method) (chempy.kinetics.rates.RampedTemp method) (chempy.kinetics.rates.SinTemp method) argument_defaults (chempy.kinetics.rates.Eyring attribute) (chempy.kinetics.rates.EyringHS attribute) argument_names (chempy.kinetics.rates.Arrhenius attribute) (chempy.kinetics.rates.Eyring attribute) (chempy.kinetics.rates.EyringHS attribute) (chempy.kinetics.rates.MassAction attribute) (chempy.kinetics.rates.Radiolytic attribute) (chempy.kinetics.rates.RampedTemp attribute) (chempy.kinetics.rates.SinTemp attribute) (chempy.thermodynamics.expressions.GibbsEqConst attribute) (chempy.thermodynamics.expressions.MassActionEq attribute)

ArithmeticDict (class in chempy.util.arithmeticdict) Arrhenius (class in chempy.kinetics.rates) arrhenius_equation() (in module chempy.kinetics.arrhenius) ArrheniusParam (class in chempy.kinetics.arrhenius) ArrheniusParamWithUnits (class in chempy.kinetics.arrhenius) as_dict() (chempy.util.pyutil.AttributeContainer method) (chempy.util.pyutil.NameSpace method) as_per_substance_array() (chempy.reactionsystem.ReactionSystem method) as_per_substance_dict() (chempy.reactionsystem.ReactionSystem method) as_per_substance_html_table() (in module chempy.printing.table) as_RateExpr() (chempy.kinetics.arrhenius.ArrheniusParam method) (chempy.kinetics.arrhenius.ArrheniusParamWithUnits method) (chempy.kinetics.eyring.EyringParam method) (chempy.kinetics.eyring.EyringParamWithUnits method) as_reactions() (chempy.chemistry.Equilibrium method) as_substance_index() (chempy.reactionsystem.ReactionSystem method) atomic_number() (in module chempy.util.periodic) AttrDict (class in chempy.util.pyutil) AttributeContainer (class in chempy.util.pyutil) attrs (chempy.chemistry.Substance attribute) avg_params() (in module chempy.util.regression)

B

B() (in module chempy.electrolytes) Backend (class in chempy.units) balance_stoichiometry() (in module chempy.chemistry) bimolecular_html_table() (chempy.reactionsystem.ReactionSystem method)

BimolecularTable (class in chempy.printing.tables) binary_irrev() (in module chempy.kinetics.integrated) binary_irrev_cstr() (in module chempy.kinetics.integrated) binary_rev() (in module chempy.kinetics.integrated) broadcast_stack() (in module chempy.util.numutil)

C

c (class in chempy.util.terminal) cache() (chempy.util.pyutil.DeferredImport property) cancel() (chempy.chemistry.Equilibrium method) categorize_substances() (chempy.reactionsystem.ReactionSystem method) chained_parameter_variation() (in module chempy.kinetics.ode) charge() (chempy.chemistry.Substance property) charge_neutrality_violation() (chempy.chemistry.Reaction method) check_all_integral() (chempy.chemistry.Reaction method) check_all_positive() (chempy.chemistry.Reaction method) check_any_effect() (chempy.chemistry.Reaction method) check_balance() (chempy.reactionsystem.ReactionSystem method) check_consistent_units() (chempy.chemistry.Equilibrium method) (chempy.chemistry.Reaction method) check_duplicate() (chempy.reactionsystem.ReactionSystem method) check_duplicate_names() (chempy.reactionsystem.ReactionSystem method) check_substance_keys() (chempy.reactionsystem.ReactionSystem method) chempy (module) chempy.arrhenius (module) chempy.chemistry (module) chempy.debye_huckel (module) chempy.einstein_smoluchowski (module) chempy.electrochemistry (module) chempy.electrochemistry.nernst (module) chempy.electrolytes (module) chempy.equilibria (module) chempy.eyring (module) chempy.henry (module) chempy.kinetics (module) chempy.kinetics.analysis (module) chempy.kinetics.arrhenius (module) chempy.kinetics.eyring (module) chempy.kinetics.integrated (module) chempy.kinetics.ode (module) chempy.kinetics.rates (module) chempy.printing (module) chempy.printing.js (module) chempy.printing.numbers (module) chempy.printing.pretty (module) chempy.printing.printer (module) chempy.printing.string (module) chempy.printing.table (module) chempy.printing.tables (module)

chempy.printing.tex (module) chempy.printing.web (module) chempy.properties (module) chempy.properties.debye_huckel_radii (module) chempy.properties.gas_sol_electrolytes_schumpe_1993 (module) chempy.properties.sulfuric_acid_density_myhre_1998 (module) chempy.properties.water_density_tanaka_2001 (module) chempy.properties.water_diffusivity_holz_2000 (module) chempy.properties.water_permittivity_bradley_pitzer_1979 (module) chempy.properties.water_viscosity_korson_1969 (module) chempy.reactionsystem (module) chempy.symbolic (module) chempy.thermodynamics (module) chempy.thermodynamics.expressions (module) chempy.units (module) chempy.util (module) chempy.util.arithmeticdict (module) chempy.util.bkh (module) chempy.util.deprecation (module) chempy.util.graph (module) chempy.util.numutil (module) chempy.util.parsing (module) chempy.util.periodic (module) chempy.util.pyutil (module) chempy.util.regression (module) chempy.util.rendering (module) chempy.util.stoich (module) chempy.util.table (module) chempy.util.terminal (module) chempy.util.testing (module) ChemPyDeprecationWarning compare_equality() (in module chempy.units) composition_balance_vectors() (chempy.reactionsystem.ReactionSystem method) composition_conservation() (chempy.equilibria.EqSystem method) composition_keys() (chempy.chemistry.Substance static method) composition_violation() (chempy.chemistry.Reaction method) concatenate() (chempy.reactionsystem.ReactionSystem static method) (in module chempy.units) copy() (chempy.chemistry.Reaction method) (chempy.util.arithmeticdict.ArithmeticDict method) counting (chempy.util.terminal.Timed attribute) css() (in module chempy.printing.web) CSSPrinter (class in chempy.printing.web)

D

davies_activity_product() (in module chempy.electrolytes) davies_log_gamma() (in module chempy.electrolytes) dCdt_list() (in module chempy.kinetics.ode) decompose_yields() (in module chempy.util.stoich) default_checks (chempy.chemistry.Reaction attribute) (chempy.reactionsystem.ReactionSystem attribute) default_unit_in_registry() (in module chempy.units) defaultkeydict (class in chempy.util.pyutil) defaultnamedtuple() (in module chempy.util.pyutil)

DeferredImport (class in chempy.util.pyutil) density_from_concentration() (in module chempy.properties.sulfuric_acid_density_myhre_1998) deprecated() (in module chempy.util.pyutil) Deprecation (class in chempy.util.deprecation) dH_over_R() (chempy.kinetics.eyring.EyringParam method) dimensionality() (chempy.chemistry.Equilibrium method) dimerization_irrev() (in module chempy.kinetics.integrated) dissolved() (chempy.equilibria.EqSystem method) dominant_reactions_graph() (in module chempy.kinetics.analysis) doprint() (chempy.printing.printer.Printer method)

E

Ea_over_R() (chempy.kinetics.arrhenius.ArrheniusParam method) Echo (class in chempy.util.terminal) electrical_mobility_from_D() (in module chempy.einstein_smoluchowski) eliminate() (chempy.chemistry.Equilibrium static method) endc (chempy.util.terminal.c attribute) eq_const() (chempy.thermodynamics.expressions.GibbsEqConst method) (chempy.thermodynamics.expressions.MassActionEq method) eq_constants() (chempy.equilibria.EqSystem method) EqExpr (class in chempy.thermodynamics.expressions) EqSystem (class in chempy.equilibria) equation_as_string() (chempy.kinetics.arrhenius.ArrheniusParam method) (chempy.kinetics.eyring.EyringParam method) Equilibrium (class in chempy.chemistry)

equilibrium_constant() (chempy.chemistry.Equilibrium method) equilibrium_equation() (chempy.chemistry.Equilibrium method) (chempy.thermodynamics.expressions.MassActionEq method) equilibrium_expr() (chempy.chemistry.Equilibrium method) equilibrium_quotient() (in module chempy.chemistry) equilibrium_quotients() (chempy.equilibria.EqSystem method) extended_activity_product() (in module chempy.electrolytes) extended_log_gamma() (in module chempy.electrolytes) ExtendedDebyeHuckelActivityProduct (class in chempy.electrolytes) Eyring (class in chempy.kinetics.rates) eyring_equation() (in module chempy.kinetics.eyring) EyringHS (class in chempy.kinetics.rates) EyringParam (class in chempy.kinetics.eyring) EyringParamWithUnits (class in chempy.kinetics.eyring)

F

fail (chempy.util.terminal.c attribute) fit_arrhenius_equation() (in module chempy.kinetics.arrhenius) fit_eyring_equation() (in module chempy.kinetics.eyring) fold_constants() (in module chempy.units) format() (chempy.kinetics.arrhenius.ArrheniusParam method) (chempy.kinetics.eyring.EyringParam method) format_string() (in module chempy.units) formula_to_composition() (in module chempy.util.parsing) formula_to_html() (in module chempy.util.parsing) formula_to_latex() (in module chempy.util.parsing)

formula_to_unicode() (in module chempy.util.parsing) from_callback() (chempy.kinetics.rates.MassAction class method) (chempy.thermodynamics.expressions.MassActionEq class method) from_fit_of_data() (chempy.kinetics.arrhenius.ArrheniusParam class method) from_formula() (chempy.chemistry.Species class method) (chempy.chemistry.Substance class method) from_rateconst_at_T() (chempy.kinetics.arrhenius.ArrheniusParam class method) (chempy.kinetics.arrhenius.ArrheniusParamWithUnits class method) from_string() (chempy.chemistry.Reaction class method) (chempy.reactionsystem.ReactionSystem class method)

G

g_value() (chempy.kinetics.rates.Radiolytic method) g_values() (chempy.kinetics.rates.Radiolytic method) get_c_at_T_and_P() (chempy.henry.Henry method) get_coeff_mtx() (in module chempy.util.stoich) get_constant_symbols() (in module chempy.symbolic) get_derived_unit() (in module chempy.units) get_kH_at_T() (chempy.henry.Henry method) get_named_keys() (chempy.kinetics.rates.MassAction method) get_neqsys() (chempy.equilibria.EqSystem method)

get_neqsys_chained_conditional() (chempy.equilibria.EqSystem method) get_neqsys_conditional_chained() (chempy.equilibria.EqSystem method) get_neqsys_static_conditions() (chempy.equilibria.EqSystem method) get_odesys() (in module chempy.kinetics.ode) get_P_at_T_and_c() (chempy.henry.Henry method) get_parsing_context() (in module chempy.util.parsing) get_physical_dimensionality() (in module chempy.units) get_physical_quantity() (in module chempy.units) get_radii() (in module chempy.properties.debye_huckel_radii) GibbsEqConst (class in chempy.thermodynamics.expressions)

H

has_precipitates() (chempy.chemistry.Reaction method) Henry (class in chempy.henry) Henry_H_at_T() (in module chempy.henry) HenryWithUnits (class in chempy.henry) html() (chempy.chemistry.Reaction method) (chempy.equilibria.EqSystem method) (chempy.kinetics.arrhenius.ArrheniusParam method) (chempy.reactionsystem.ReactionSystem method) (in module chempy.printing.web)

html_of_unit() (in module chempy.units) HTMLPrinter (class in chempy.printing.web)

I

identify_equilibria() (chempy.reactionsystem.ReactionSystem method) identity() (in module chempy.util.pyutil) inspect() (chempy.util.deprecation.Deprecation class method) integration_with_sliders() (in module chempy.util.bkh) ionic_strength() (in module chempy.electrolytes)

irls() (in module chempy.util.regression) irls_units() (in module chempy.util.regression) is_quantity() (in module chempy.units) is_unitless() (in module chempy.units) isclose() (chempy.util.arithmeticdict.ArithmeticDict method)

J

javascript() (in module chempy.printing.js)

JSPrinter (class in chempy.printing.js)

K

K() (chempy.chemistry.Equilibrium method)

kB_h_times_exp_dS_R() (chempy.kinetics.eyring.EyringParam method) keys() (chempy.chemistry.Reaction method)

L

latex() (chempy.chemistry.Reaction method) (in module chempy.printing.tex) latex_of_unit() (in module chempy.units) LatexPrinter (class in chempy.printing.tex) law_of_mass_action_rates() (in module chempy.kinetics.ode) least_squares() (in module chempy.util.regression) least_squares_units() (in module chempy.util.regression)

lg_solubility_ratio() (in module chempy.properties.gas_sol_electrolytes_schumpe_1993) limit_logging() (in module chempy.util.terminal) limiting_activity_product() (in module chempy.electrolytes) limiting_log_gamma() (in module chempy.electrolytes) LimitingDebyeHuckelActivityProduct (class in chempy.electrolytes) linspace() (in module chempy.units) logspace_from_lin() (in module chempy.units)

M

magnitude() (in module chempy.units) mass() (chempy.chemistry.Substance property) mass_balance_violation() (chempy.chemistry.Reaction method) mass_fractions() (in module chempy.chemistry) mass_from_composition() (in module chempy.util.periodic)

MassAction (class in chempy.kinetics.rates) MassActionEq (class in chempy.thermodynamics.expressions) memoize() (in module chempy.util.pyutil) mk_Radiolytic() (in module chempy.kinetics.rates) molar_mass() (chempy.chemistry.Substance method) multi_indexed_cases() (in module chempy.util.pyutil)

N

NameSpace (class in chempy.util.pyutil) nernst_potential() (in module chempy.electrochemistry.nernst) net_stoich() (chempy.chemistry.Reaction method) net_stoichs() (chempy.reactionsystem.ReactionSystem method) NoConvergence non_precip_rids() (chempy.equilibria.EqSystem method) non_precipitate_stoich() (chempy.chemistry.Reaction method)

Notify (class in chempy.util.terminal) notify() (chempy.util.terminal.Notify method) nr() (chempy.reactionsystem.ReactionSystem property) ns() (chempy.reactionsystem.ReactionSystem property) number_to_scientific_html() (in module chempy.printing.numbers) number_to_scientific_latex() (in module chempy.printing.numbers) number_to_scientific_unicode() (in module chempy.printing.numbers)

O

obeys_charge_neutrality() (chempy.reactionsystem.ReactionSystem method) obeys_mass_balance() (chempy.reactionsystem.ReactionSystem method)

ok (chempy.util.terminal.c attribute) order() (chempy.chemistry.Reaction method) other_phase_species_idxs() (chempy.equilibria.EqSystem method)

P

param_char (chempy.chemistry.Equilibrium attribute) (chempy.chemistry.Reaction attribute) parameter_keys (chempy.kinetics.rates.Arrhenius attribute) (chempy.kinetics.rates.Eyring attribute) (chempy.kinetics.rates.EyringHS attribute) (chempy.kinetics.rates.Radiolytic attribute) (chempy.kinetics.rates.RampedTemp attribute) (chempy.kinetics.rates.SinTemp attribute) (chempy.thermodynamics.expressions.GibbsEqConst attribute) params() (chempy.reactionsystem.ReactionSystem method) per_reaction_effect_on_substance() (chempy.reactionsystem.ReactionSystem method) per_substance_varied() (chempy.reactionsystem.ReactionSystem method) phase_transfer_reaction_idxs() (chempy.equilibria.EqSystem method) plot_avg_params() (in module chempy.util.regression) plot_errors() (chempy.equilibria.EqSystem method)

plot_fit() (in module chempy.util.regression) plot_least_squares_fit() (in module chempy.util.regression) plot_reaction_contributions() (in module chempy.kinetics.analysis) polyfit() (in module chempy.units) polyval() (in module chempy.units) precipitate() (chempy.chemistry.Species property) precipitate_factor() (chempy.chemistry.Equilibrium method) precipitate_rxn_idxs() (chempy.equilibria.EqSystem property) precipitate_stoich() (chempy.chemistry.Reaction method) precipitate_substance_idxs() (chempy.equilibria.EqSystem property) Printer (class in chempy.printing.printer) printmethod_attr (chempy.printing.printer.Printer attribute) (chempy.printing.web.HTMLPrinter attribute) pseudo_irrev() (in module chempy.kinetics.integrated) pseudo_rev() (in module chempy.kinetics.integrated)

Q

Q() (chempy.chemistry.Equilibrium method)

R

Radiolytic (class in chempy.kinetics.rates) RadiolyticBase (class in chempy.kinetics.rates) RampedTemp (class in chempy.kinetics.rates) rate() (chempy.chemistry.Reaction method) rate_coeff() (chempy.kinetics.rates.MassAction method) rate_expr() (chempy.chemistry.Reaction method) RateExpr (class in chempy.kinetics.rates) rates() (chempy.reactionsystem.ReactionSystem method) Reaction (class in chempy.chemistry) ReactionSystem (class in chempy.reactionsystem)

render_tex_to_pdf() (in module chempy.util.table) requires (class in chempy.util.testing) rescale() (in module chempy.units) roman() (in module chempy.printing.numbers) root() (chempy.equilibria.EqSystem method) roots() (chempy.equilibria.EqSystem method) rsys2dot() (in module chempy.util.graph) rsys2graph() (in module chempy.util.graph) rsys2pdf_table() (in module chempy.util.table) rsys2table() (in module chempy.util.table) rsys2tablines() (in module chempy.util.table)

S

simplified() (in module chempy.units) SinTemp (class in chempy.kinetics.rates) skipif() (in module chempy.util.testing) Solute (class in chempy.chemistry) solve() (chempy.equilibria.EqSystem method) sort_substances_inplace() (chempy.reactionsystem.ReactionSystem method) Species (class in chempy.chemistry) split() (chempy.reactionsystem.ReactionSystem method) stoichs() (chempy.reactionsystem.ReactionSystem method) stoichs_constants() (chempy.equilibria.EqSystem method) str_() (in module chempy.printing.string)

string() (chempy.chemistry.Reaction method) (chempy.kinetics.rates.MassAction method) (chempy.reactionsystem.ReactionSystem method) StrPrinter (class in chempy.printing.string) subclass_from_callback() (chempy.kinetics.rates.MassAction class method) (chempy.kinetics.rates.RateExpr class method) subset() (chempy.reactionsystem.ReactionSystem method) Substance (class in chempy.chemistry) substance_labels() (chempy.equilibria.EqSystem method) substance_names() (chempy.reactionsystem.ReactionSystem method) substance_participation() (chempy.reactionsystem.ReactionSystem method) sulfuric_acid_density() (in module chempy.properties.sulfuric_acid_density_myhre_1998)

T

Table (class in chempy.printing.table) TemplateEvaluator (class in chempy.util.rendering) tic() (chempy.util.terminal.Timed method) tile() (in module chempy.units)

Timed (class in chempy.util.terminal) to_reaction() (in module chempy.util.parsing) to_unitless() (in module chempy.units) toc() (chempy.util.terminal.Timed method)

U

unary_irrev_cstr() (in module chempy.kinetics.integrated) uncertainty() (in module chempy.units) unicode() (chempy.chemistry.Reaction method) (chempy.kinetics.arrhenius.ArrheniusParam method) unicode_() (in module chempy.printing.pretty) unicode_of_unit() (in module chempy.units) UnicodePrinter (class in chempy.printing.pretty)

uniform() (in module chempy.units) unimolecular_html_table() (chempy.reactionsystem.ReactionSystem method) UnimolecularTable (class in chempy.printing.tables) unit_of() (in module chempy.units) unit_registry_from_human_readable() (in module chempy.units) unit_registry_to_human_readable() (in module chempy.units) unitless_in_registry() (in module chempy.units) upper_conc_bounds() (chempy.reactionsystem.ReactionSystem method)

W

water_density() (in module chempy.properties.water_density_tanaka_2001) water_permittivity() (in module chempy.properties.water_permittivity_bradley_pitzer_1979)

water_self_diffusion_coefficient() (in module chempy.properties.water_diffusivity_holz_2000) water_viscosity() (in module chempy.properties.water_viscosity_korson_1969)